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@aristoteleo

Aristotle

Foundational software ecosystem for predictive genomics

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  1. dynamo-release dynamo-release Public

    Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

    Python 485 62

  2. spateo-release spateo-release Public

    Spatiotemporal modeling of spatial transcriptomics

    Python 325 42

  3. pantheon-cli pantheon-cli Public

    Pantheon-CLI, our first release of PantheonOS, the AgentOS that re-imagines Science

    Python 220 17

  4. dynamo-tutorials dynamo-tutorials Public

    Tutorials on using latest dynamo package

    Jupyter Notebook 26 13

  5. spateo-viewer spateo-viewer Public

    Web application demonstrating 3D modeling of spatial transcriptomics

    Python 22 7

  6. tabula tabula Public

    federated learning with tabular learning

    Jupyter Notebook 25 3

Repositories

Showing 10 of 51 repositories
  • dynamo-release Public

    Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

    aristoteleo/dynamo-release’s past year of commit activity
    Python 485 BSD-3-Clause 62 1 13 Updated Jan 22, 2026
  • spateo-release Public

    Spatiotemporal modeling of spatial transcriptomics

    aristoteleo/spateo-release’s past year of commit activity
    Python 325 BSD-2-Clause 42 19 11 Updated Jan 12, 2026
  • dynamo-tutorials Public

    Tutorials on using latest dynamo package

    aristoteleo/dynamo-tutorials’s past year of commit activity
    Jupyter Notebook 26 13 3 0 Updated Dec 21, 2025
  • epione Public

    Analysis of epigenetic data in Python

    aristoteleo/epione’s past year of commit activity
    Jupyter Notebook 7 GPL-3.0 1 1 0 Updated Oct 31, 2025
  • awesome-bioagent-papers Public

    Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.

    aristoteleo/awesome-bioagent-papers’s past year of commit activity
    Python 84 6 2 30 Updated Oct 19, 2025
  • pantheon-cli Public

    Pantheon-CLI, our first release of PantheonOS, the AgentOS that re-imagines Science

    aristoteleo/pantheon-cli’s past year of commit activity
    Python 220 17 8 1 Updated Oct 2, 2025
  • qiu_lab_website Public

    The source code for the Qiu lab website (based on ato-neulab)

    aristoteleo/qiu_lab_website’s past year of commit activity
    HTML 0 MIT 0 12 0 Updated Sep 20, 2025
  • aristoteleo/pantheon-cli-tutorial’s past year of commit activity
    Vue 0 1 0 0 Updated Aug 25, 2025
  • dynast-release Public

    Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments

    aristoteleo/dynast-release’s past year of commit activity
    Python 19 MIT 6 4 1 Updated Aug 12, 2025
  • pantheon-llm Public
    aristoteleo/pantheon-llm’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 6, 2025